|
Prediction in text file can be found in
query.result.txt
The sequence file in FASTA format can be found in
seq.fa
Predicted topologies and predicted ΔG values:
Consensus prediction (TOPCONS):
Predicted signal peptide and TM-helix positions (position starting from 1):
| TOPCONS |
TM1: 18-38, |
TM2: 50-70, |
TM3: 77-97, |
TM4: 99-119 |
| OCTOPUS |
TM1: 18-38, |
TM2: 50-70, |
TM3: 81-95, |
TM4: 97-111 |
| Philius |
TM1: 20-40, |
TM2: 49-72, |
TM3: 83-108 |
| PolyPhobius |
TM1: 20-38, |
TM2: 50-71, |
TM3: 79-96, |
TM4: 98-119 |
| SCAMPI |
TM1: 20-40, |
TM2: 49-69, |
TM3: 75-95, |
TM4: 99-119 |
| SPOCTOPUS |
TM1: 18-38, |
TM2: 50-70, |
TM3: 81-95, |
TM4: 97-111 |
| PDB-homology |
***No homologous TM proteins detected*** |
Sequence and predicted topologies:
(i: inside the membrane, o: outside of the membrane, M: membrane region, u: non-membrane region but location unkown)
| | 1 41 | | Seq. | MDKLSIEEIL RKILIEKYKY TVVIAVSYYI LPFLIYLIPV DDPFDRMTLF |
| TOPCONS | iiiiiiiiii iiiiiiiMMM MMMMMMMMMM MMMMMMMMoo oooooooooM |
| OCTOPUS | iiiiiiiiii iiiiiiiMMM MMMMMMMMMM MMMMMMMMoo oooooooooM |
| PHILIUS | iiiiiiiiii iiiiiiiiiM MMMMMMMMMM MMMMMMMMMM ooooooooMM |
| PolyPhobius | iiiiiiiiii iiiiiiiiiM MMMMMMMMMM MMMMMMMMoo oooooooooM |
| SCAMPI | iiiiiiiiii iiiiiiiiiM MMMMMMMMMM MMMMMMMMMM ooooooooMM |
| SPOCTOPUS | iiiiiiiiii iiiiiiiMMM MMMMMMMMMM MMMMMMMMoo oooooooooM |
| |
| | 51 91 | | Seq. | ALAVIAVIPF ILLVLSIIFA MYNGFHLYFS FRVFILCLAY MIFTGASVFI |
| TOPCONS | MMMMMMMMMM MMMMMMMMMM iiiiiiMMMM MMMMMMMMMM MMMMMMMoMM |
| OCTOPUS | MMMMMMMMMM MMMMMMMMMM iiiiiiiiii MMMMMMMMMM MMMMMoMMMM |
| PHILIUS | MMMMMMMMMM MMMMMMMMMM MMiiiiiiii iiMMMMMMMM MMMMMMMMMM |
| PolyPhobius | MMMMMMMMMM MMMMMMMMMM MiiiiiiiMM MMMMMMMMMM MMMMMMoMMM |
| SCAMPI | MMMMMMMMMM MMMMMMMMMi iiiiMMMMMM MMMMMMMMMM MMMMMoooMM |
| SPOCTOPUS | MMMMMMMMMM MMMMMMMMMM iiiiiiiiii MMMMMMMMMM MMMMMoMMMM |
| |
| | 101 121 | | Seq. | YCGILFIVSL TGQSIGASIR THKW |
| TOPCONS | MMMMMMMMMM MMMMMMMMMi iiii |
| OCTOPUS | MMMMMMMMMM Miiiiiiiii iiii |
| PHILIUS | MMMMMMMMoo oooooooooo oooo |
| PolyPhobius | MMMMMMMMMM MMMMMMMMMi iiii |
| SCAMPI | MMMMMMMMMM MMMMMMMMMi iiii |
| SPOCTOPUS | MMMMMMMMMM Miiiiiiiii iiii |
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