|
Prediction in text file can be found in
query.result.txt
The sequence file in FASTA format can be found in
seq.fa
Predicted topologies and predicted ΔG values:
Consensus prediction (TOPCONS):
Predicted signal peptide and TM-helix positions (position starting from 1):
| TOPCONS |
TM1: 44-64, |
TM2: 87-107 |
| OCTOPUS |
TM1: 45-65, |
TM2: 86-106 |
| Philius |
TM1: 41-63, |
TM2: 83-108 |
| PolyPhobius |
TM1: 42-67, |
TM2: 85-108 |
| SCAMPI |
TM1: 44-64, |
TM2: 88-108 |
| SPOCTOPUS |
TM1: 45-65, |
TM2: 87-107 |
| PDB-homology |
***No homologous TM proteins detected*** |
Sequence and predicted topologies:
(i: inside the membrane, o: outside of the membrane, M: membrane region, u: non-membrane region but location unkown)
| | 1 41 | | Seq. | MSKVVVRTKE ELKIAYAGKV DEIIIEGKLA KQIRDLEKIK LFSPVAIGAL |
| TOPCONS | iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiMMMMMMM |
| OCTOPUS | iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiMMMMMM |
| PHILIUS | iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii MMMMMMMMMM |
| PolyPhobius | iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iMMMMMMMMM |
| SCAMPI | iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiMMMMMMM |
| SPOCTOPUS | iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiMMMMMM |
| |
| | 51 91 | | Seq. | TAAGVAFLAS TVSGPITGGI SYFAAVATLE TAAATTGLSV PLIILSCSIG |
| TOPCONS | MMMMMMMMMM MMMMoooooo oooooooooo ooooooMMMM MMMMMMMMMM |
| OCTOPUS | MMMMMMMMMM MMMMMooooo oooooooooo oooooMMMMM MMMMMMMMMM |
| PHILIUS | MMMMMMMMMM MMMooooooo oooooooooo ooMMMMMMMM MMMMMMMMMM |
| PolyPhobius | MMMMMMMMMM MMMMMMMooo oooooooooo ooooMMMMMM MMMMMMMMMM |
| SCAMPI | MMMMMMMMMM MMMMoooooo oooooooooo oooooooMMM MMMMMMMMMM |
| SPOCTOPUS | MMMMMMMMMM MMMMMooooo oooooooooo ooooooMMMM MMMMMMMMMM |
| |
| | 101 121 | | Seq. | VALLVAIFKE YDMEAVVSGK GIKVILRKR |
| TOPCONS | MMMMMMMiii iiiiiiiiii iiiiiiiii |
| OCTOPUS | MMMMMMiiii iiiiiiiiii iiiiiiiii |
| PHILIUS | MMMMMMMMii iiiiiiiiii iiiiiiiii |
| PolyPhobius | MMMMMMMMii iiiiiiiiii iiiiiiiii |
| SCAMPI | MMMMMMMMii iiiiiiiiii iiiiiiiii |
| SPOCTOPUS | MMMMMMMiii iiiiiiiiii iiiiiiiii |
|
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