|
Prediction in text file can be found in
query.result.txt
The sequence file in FASTA format can be found in
seq.fa
Predicted topologies and predicted ΔG values:
Consensus prediction (TOPCONS):
Predicted signal peptide and TM-helix positions (position starting from 1):
| TOPCONS |
***No signal peptide nor TM-regions predicted*** |
| OCTOPUS |
***No signal peptide nor TM-regions predicted*** |
| Philius |
***No signal peptide nor TM-regions predicted*** |
| PolyPhobius |
TM1: 64-82 |
| SCAMPI |
***No signal peptide nor TM-regions predicted*** |
| SPOCTOPUS |
***No signal peptide nor TM-regions predicted*** |
| PDB-homology |
***No homologous TM proteins detected*** |
Sequence and predicted topologies:
(i: inside the membrane, o: outside of the membrane, M: membrane region, u: non-membrane region but location unkown)
| | 1 41 | | Seq. | MSKIYKLKYI YPATEQVYGM CTVNTKTIVY DGLCGIELRN IDKIQWYETY |
| TOPCONS | |
| OCTOPUS | |
| PHILIUS | |
| PolyPhobius | iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii |
| SCAMPI | |
| SPOCTOPUS | |
| |
| | 51 91 | | Seq. | IDSQNTNNQQ FKNALIGSFI AGSTGAIIAS AFKNNIQKPC QCMEVFYYDD |
| TOPCONS | |
| OCTOPUS | |
| PHILIUS | |
| PolyPhobius | iiiiiiiiii iiiMMMMMMM MMMMMMMMMM MMoooooooo oooooooooo |
| SCAMPI | |
| SPOCTOPUS | |
| |
| | 101 141 | | Seq. | NQIKIIVLAD VFIKSQVSEC LYSLKDVLVQ YNINVNYKKI NFENSFMFRK |
| TOPCONS | |
| OCTOPUS | |
| PHILIUS | |
| PolyPhobius | oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo |
| SCAMPI | |
| SPOCTOPUS | |
| |
| | 151 191 | | Seq. | NNNNIINNSK QNNNSEQNDI PTQIKQLAEL KKQGILTDEE FTSKKQELLA |
| TOPCONS | |
| OCTOPUS | |
| PHILIUS | |
| PolyPhobius | oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo |
| SCAMPI | |
| SPOCTOPUS | |
| |
| | 201 | | Seq. | RL |
| TOPCONS | |
| OCTOPUS | |
| PHILIUS | |
| PolyPhobius | oo |
| SCAMPI | |
| SPOCTOPUS | |
|
|
