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© Arne Elofsson

SciLifeLab Logotype nbis Logotype
SeRC Logotype Stockholm University logotype EGI logotype

Prediction in text file can be found in query.result.txt

The sequence file in FASTA format can be found in seq.fa


Predicted topologies and predicted ΔG values:

Topology
High-resolution image


Consensus prediction (TOPCONS):

Consensus
High-resolution image

Predicted signal peptide and TM-helix positions (position starting from 1):

TOPCONS  TM1: 18-38, TM2: 50-70, TM3: 77-97, TM4: 99-119
OCTOPUS  TM1: 18-38, TM2: 50-70, TM3: 81-95, TM4: 97-111
Philius  TM1: 20-40, TM2: 49-72, TM3: 83-108
PolyPhobius  TM1: 20-38, TM2: 50-71, TM3: 79-96, TM4: 98-119
SCAMPI  TM1: 20-40, TM2: 49-69, TM3: 75-95, TM4: 99-119
SPOCTOPUS  TM1: 18-38, TM2: 50-70, TM3: 81-95, TM4: 97-111
PDB-homology  ***No homologous TM proteins detected***

Sequence and predicted topologies: (i: inside the membrane, o: outside of the membrane, M: membrane region, u: non-membrane region but location unkown)

 1                                           41         
Seq.   MDKLSIEEIL RKILIEKYKY TVVIAVSYYI LPFLIYLIPV DDPFDRMTLF
TOPCONS   iiiiiiiiii iiiiiiiMMM MMMMMMMMMM MMMMMMMMoo oooooooooM
OCTOPUS   iiiiiiiiii iiiiiiiMMM MMMMMMMMMM MMMMMMMMoo oooooooooM
PHILIUS   iiiiiiiiii iiiiiiiiiM MMMMMMMMMM MMMMMMMMMM ooooooooMM
PolyPhobius   iiiiiiiiii iiiiiiiiiM MMMMMMMMMM MMMMMMMMoo oooooooooM
SCAMPI   iiiiiiiiii iiiiiiiiiM MMMMMMMMMM MMMMMMMMMM ooooooooMM
SPOCTOPUS   iiiiiiiiii iiiiiiiMMM MMMMMMMMMM MMMMMMMMoo oooooooooM
 
 51                                          91         
Seq.   ALAVIAVIPF ILLVLSIIFA MYNGFHLYFS FRVFILCLAY MIFTGASVFI
TOPCONS   MMMMMMMMMM MMMMMMMMMM iiiiiiMMMM MMMMMMMMMM MMMMMMMoMM
OCTOPUS   MMMMMMMMMM MMMMMMMMMM iiiiiiiiii MMMMMMMMMM MMMMMoMMMM
PHILIUS   MMMMMMMMMM MMMMMMMMMM MMiiiiiiii iiMMMMMMMM MMMMMMMMMM
PolyPhobius   MMMMMMMMMM MMMMMMMMMM MiiiiiiiMM MMMMMMMMMM MMMMMMoMMM
SCAMPI   MMMMMMMMMM MMMMMMMMMi iiiiMMMMMM MMMMMMMMMM MMMMMoooMM
SPOCTOPUS   MMMMMMMMMM MMMMMMMMMM iiiiiiiiii MMMMMMMMMM MMMMMoMMMM
 
 101                   121        
Seq.   YCGILFIVSL TGQSIGASIR THKW
TOPCONS   MMMMMMMMMM MMMMMMMMMi iiii
OCTOPUS   MMMMMMMMMM Miiiiiiiii iiii
PHILIUS   MMMMMMMMoo oooooooooo oooo
PolyPhobius   MMMMMMMMMM MMMMMMMMMi iiii
SCAMPI   MMMMMMMMMM MMMMMMMMMi iiii
SPOCTOPUS   MMMMMMMMMM Miiiiiiiii iiii