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© Arne Elofsson

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Prediction in text file can be found in query.result.txt

The sequence file in FASTA format can be found in seq.fa


Predicted topologies and predicted ΔG values:

Topology
High-resolution image


Consensus prediction (TOPCONS):

Consensus
High-resolution image

Predicted signal peptide and TM-helix positions (position starting from 1):

TOPCONS  TM1: 13-33, TM2: 137-157, TM3: 159-179, TM4: 189-209, TM5: 247-267, TM6: 277-297, TM7: 328-348
OCTOPUS  TM1: 13-33, TM2: 149-163, TM3: 165-179, TM4: 189-209, TM5: 247-267, TM6: 278-298, TM7: 328-348
Philius  TM1: 11-33, TM2: 159-178, TM3: 189-211, TM4: 245-267, TM5: 277-297, TM6: 329-349
PolyPhobius  TM1: 12-34, TM2: 150-178, TM3: 190-212, TM4: 244-267, TM5: 277-297, TM6: 328-349
SCAMPI  TM1: 15-35, TM2: 159-179, TM3: 191-211, TM4: 252-272, TM5: 277-297, TM6: 327-347
SPOCTOPUS  TM1: 13-33, TM2: 149-163, TM3: 165-179, TM4: 189-209, TM5: 247-267, TM6: 278-298, TM7: 328-348
PDB-homology  ***No homologous TM proteins detected***

Sequence and predicted topologies: (i: inside the membrane, o: outside of the membrane, M: membrane region, u: non-membrane region but location unkown)

 1                                           41         
Seq.   MNHITGKRHY ATIIYILLIS YFIFLVTTGL GILQYGSTKN LDFLKNKYEE
TOPCONS   oooooooooo ooMMMMMMMM MMMMMMMMMM MMMiiiiiii iiiiiiiiii
OCTOPUS   oooooooooo ooMMMMMMMM MMMMMMMMMM MMMiiiiiii iiiiiiiiii
PHILIUS   iiiiiiiiii MMMMMMMMMM MMMMMMMMMM MMMooooooo oooooooooo
PolyPhobius   iiiiiiiiii iMMMMMMMMM MMMMMMMMMM MMMMoooooo oooooooooo
SCAMPI   oooooooooo ooooMMMMMM MMMMMMMMMM MMMMMiiiii iiiiiiiiii
SPOCTOPUS   oooooooooo ooMMMMMMMM MMMMMMMMMM MMMiiiiiii iiiiiiiiii
 
 51                                          91         
Seq.   IEGKYNYLIS NMSVGNIEEN NREILYLDEM RSEILDSVDK EGEFWKVELK
TOPCONS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
OCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
PHILIUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PolyPhobius   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SCAMPI   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
SPOCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
 
 101                                         141        
Seq.   NIILQKEELL LKSSFDRDTN YLRLKNETDE YNLYYSLGKK PLDYLDGFFI
TOPCONS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiMMMM MMMMMMMMMM
OCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiMM
PHILIUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PolyPhobius   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooM
SCAMPI   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
SPOCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiMM
 
 151                                         191        
Seq.   RYFLFLFNSL GHQIFLTCTV LGICYLYISD TKYIGFFKTI GIICVPLLCI
TOPCONS   MMMMMMMoMM MMMMMMMMMM MMMMMMMMMi iiiiiiiiMM MMMMMMMMMM
OCTOPUS   MMMMMMMMMM MMMoMMMMMM MMMMMMMMMi iiiiiiiiMM MMMMMMMMMM
PHILIUS   ooooooooMM MMMMMMMMMM MMMMMMMMii iiiiiiiiMM MMMMMMMMMM
PolyPhobius   MMMMMMMMMM MMMMMMMMMM MMMMMMMMii iiiiiiiiiM MMMMMMMMMM
SCAMPI   iiiiiiiiMM MMMMMMMMMM MMMMMMMMMo oooooooooo MMMMMMMMMM
SPOCTOPUS   MMMMMMMMMM MMMoMMMMMM MMMMMMMMMi iiiiiiiiMM MMMMMMMMMM
 
 201                                         241        
Seq.   QIFSLIFCIA LDSKIDIFYP VRVVGDFNIY NFNNNLSTIN NVLPLYIVIL
TOPCONS   MMMMMMMMMo oooooooooo oooooooooo oooooooooo ooooooMMMM
OCTOPUS   MMMMMMMMMo oooooooooo oooooooooo oooooooooo ooooooMMMM
PHILIUS   MMMMMMMMMM Mooooooooo oooooooooo oooooooooo ooooMMMMMM
PolyPhobius   MMMMMMMMMM MMoooooooo oooooooooo oooooooooo oooMMMMMMM
SCAMPI   MMMMMMMMMM Miiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
SPOCTOPUS   MMMMMMMMMo oooooooooo oooooooooo oooooooooo ooooooMMMM
 
 251                                         291        
Seq.   KVLLLEGLYI VFIVSFIKII DLVFVRYCMK IMGILVFLFS MFGMLYTRYS
TOPCONS   MMMMMMMMMM MMMMMMMiii iiiiiiMMMM MMMMMMMMMM MMMMMMMooo
OCTOPUS   MMMMMMMMMM MMMMMMMiii iiiiiiiMMM MMMMMMMMMM MMMMMMMMoo
PHILIUS   MMMMMMMMMM MMMMMMMiii iiiiiiMMMM MMMMMMMMMM MMMMMMMooo
PolyPhobius   MMMMMMMMMM MMMMMMMiii iiiiiiMMMM MMMMMMMMMM MMMMMMMooo
SCAMPI   iMMMMMMMMM MMMMMMMMMM MMooooMMMM MMMMMMMMMM MMMMMMMiii
SPOCTOPUS   MMMMMMMMMM MMMMMMMiii iiiiiiiMMM MMMMMMMMMM MMMMMMMMoo
 
 301                                         341        
Seq.   SISFLSYGKF LDIVRGYEAI YRGDTYLNIK FLSIFIFFVL VILGFIYFLK
TOPCONS   oooooooooo oooooooooo oooooooMMM MMMMMMMMMM MMMMMMMMii
OCTOPUS   oooooooooo oooooooooo oooooooMMM MMMMMMMMMM MMMMMMMMii
PHILIUS   oooooooooo oooooooooo ooooooooMM MMMMMMMMMM MMMMMMMMMi
PolyPhobius   oooooooooo oooooooooo oooooooMMM MMMMMMMMMM MMMMMMMMMi
SCAMPI   iiiiiiiiii iiiiiiiiii iiiiiiMMMM MMMMMMMMMM MMMMMMMooo
SPOCTOPUS   oooooooooo oooooooooo oooooooMMM MMMMMMMMMM MMMMMMMMii
 
 351        
Seq.   KYFLNDEYVS
TOPCONS   iiiiiiiiii
OCTOPUS   iiiiiiiiii
PHILIUS   iiiiiiiiii
PolyPhobius   iiiiiiiiii
SCAMPI   oooooooooo
SPOCTOPUS   iiiiiiiiii