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© Arne Elofsson

SciLifeLab Logotype nbis Logotype
SeRC Logotype Stockholm University logotype EGI logotype

Prediction in text file can be found in query.result.txt

The sequence file in FASTA format can be found in seq.fa


Predicted topologies and predicted ΔG values:

Topology
High-resolution image


Consensus prediction (TOPCONS):

Consensus
High-resolution image

Predicted signal peptide and TM-helix positions (position starting from 1):

TOPCONS  TM1: 14-34, TM2: 44-64, TM3: 72-92, TM4: 94-114
OCTOPUS  TM1: 14-34, TM2: 44-64, TM3: 76-90, TM4: 92-106
Philius  TM1: 15-35, TM2: 43-65, TM3: 73-107
PolyPhobius  TM1: 13-33, TM2: 44-65, TM3: 72-89, TM4: 93-114
SCAMPI  TM1: 13-33, TM2: 44-64, TM3: 72-92, TM4: 94-114
SPOCTOPUS  TM1: 14-34, TM2: 44-64, TM3: 76-90, TM4: 92-106
PDB-homology  ***No homologous TM proteins detected***

Sequence and predicted topologies: (i: inside the membrane, o: outside of the membrane, M: membrane region, u: non-membrane region but location unkown)

 1                                           41         
Seq.   MEEILKKVFI EKYKYSIVIA ISYYILPFSV YIVPVEDPFD RAILFAYIVI
TOPCONS   iiiiiiiiii iiiMMMMMMM MMMMMMMMMM MMMMoooooo oooMMMMMMM
OCTOPUS   iiiiiiiiii iiiMMMMMMM MMMMMMMMMM MMMMoooooo oooMMMMMMM
PHILIUS   iiiiiiiiii iiiiMMMMMM MMMMMMMMMM MMMMMooooo ooMMMMMMMM
PolyPhobius   iiiiiiiiii iiMMMMMMMM MMMMMMMMMM MMMooooooo oooMMMMMMM
SCAMPI   iiiiiiiiii iiMMMMMMMM MMMMMMMMMM MMMooooooo oooMMMMMMM
SPOCTOPUS   iiiiiiiiii iiiMMMMMMM MMMMMMMMMM MMMMoooooo oooMMMMMMM
 
 51                                          91         
Seq.   AVIPLILLVL SIIFAIRNGF YWYFSFRIFI LCLAYMLFTG ISILMFCVGY
TOPCONS   MMMMMMMMMM MMMMiiiiii iMMMMMMMMM MMMMMMMMMM MMoMMMMMMM
OCTOPUS   MMMMMMMMMM MMMMiiiiii iiiiiMMMMM MMMMMMMMMM oMMMMMMMMM
PHILIUS   MMMMMMMMMM MMMMMiiiii iiMMMMMMMM MMMMMMMMMM MMMMMMMMMM
PolyPhobius   MMMMMMMMMM MMMMMiiiii iMMMMMMMMM MMMMMMMMMo ooMMMMMMMM
SCAMPI   MMMMMMMMMM MMMMiiiiii iMMMMMMMMM MMMMMMMMMM MMoMMMMMMM
SPOCTOPUS   MMMMMMMMMM MMMMiiiiii iiiiiMMMMM MMMMMMMMMM oMMMMMMMMM
 
 101        111        
Seq.   FIVSVIGQCI GAFIRDHKL
TOPCONS   MMMMMMMMMM MMMMiiiii
OCTOPUS   MMMMMMiiii iiiiiiiii
PHILIUS   MMMMMMMooo ooooooooo
PolyPhobius   MMMMMMMMMM MMMMiiiii
SCAMPI   MMMMMMMMMM MMMMiiiii
SPOCTOPUS   MMMMMMiiii iiiiiiiii