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© Arne Elofsson

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Prediction in text file can be found in query.result.txt

The sequence file in FASTA format can be found in seq.fa


Predicted topologies and predicted ΔG values:

Topology
High-resolution image


Consensus prediction (TOPCONS):

Consensus
High-resolution image

Predicted signal peptide and TM-helix positions (position starting from 1):

TOPCONS  TM1: 44-64, TM2: 87-107
OCTOPUS  TM1: 45-65, TM2: 86-106
Philius  TM1: 41-63, TM2: 83-108
PolyPhobius  TM1: 42-67, TM2: 85-108
SCAMPI  TM1: 44-64, TM2: 88-108
SPOCTOPUS  TM1: 45-65, TM2: 87-107
PDB-homology  ***No homologous TM proteins detected***

Sequence and predicted topologies: (i: inside the membrane, o: outside of the membrane, M: membrane region, u: non-membrane region but location unkown)

 1                                           41         
Seq.   MSKVVVRTKE ELKIAYAGKV DEIIIEGKLA KQIRDLEKIK LFSPVAIGAL
TOPCONS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiMMMMMMM
OCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiMMMMMM
PHILIUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii MMMMMMMMMM
PolyPhobius   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iMMMMMMMMM
SCAMPI   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiMMMMMMM
SPOCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiMMMMMM
 
 51                                          91         
Seq.   TAAGVAFLAS TVSGPITGGI SYFAAVATLE TAAATTGLSV PLIILSCSIG
TOPCONS   MMMMMMMMMM MMMMoooooo oooooooooo ooooooMMMM MMMMMMMMMM
OCTOPUS   MMMMMMMMMM MMMMMooooo oooooooooo oooooMMMMM MMMMMMMMMM
PHILIUS   MMMMMMMMMM MMMooooooo oooooooooo ooMMMMMMMM MMMMMMMMMM
PolyPhobius   MMMMMMMMMM MMMMMMMooo oooooooooo ooooMMMMMM MMMMMMMMMM
SCAMPI   MMMMMMMMMM MMMMoooooo oooooooooo oooooooMMM MMMMMMMMMM
SPOCTOPUS   MMMMMMMMMM MMMMMooooo oooooooooo ooooooMMMM MMMMMMMMMM
 
 101                   121        
Seq.   VALLVAIFKE YDMEAVVSGK GIKVILRKR
TOPCONS   MMMMMMMiii iiiiiiiiii iiiiiiiii
OCTOPUS   MMMMMMiiii iiiiiiiiii iiiiiiiii
PHILIUS   MMMMMMMMii iiiiiiiiii iiiiiiiii
PolyPhobius   MMMMMMMMii iiiiiiiiii iiiiiiiii
SCAMPI   MMMMMMMMii iiiiiiiiii iiiiiiiii
SPOCTOPUS   MMMMMMMiii iiiiiiiiii iiiiiiiii