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© Arne Elofsson

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Prediction in text file can be found in query.result.txt

The sequence file in FASTA format can be found in seq.fa


Predicted topologies and predicted ΔG values:

Topology
High-resolution image


Consensus prediction (TOPCONS):

Consensus
High-resolution image

Predicted signal peptide and TM-helix positions (position starting from 1):

TOPCONS  ***No signal peptide nor TM-regions predicted***
OCTOPUS  ***No signal peptide nor TM-regions predicted***
Philius  ***No signal peptide nor TM-regions predicted***
PolyPhobius  TM1: 64-82
SCAMPI  ***No signal peptide nor TM-regions predicted***
SPOCTOPUS  ***No signal peptide nor TM-regions predicted***
PDB-homology  ***No homologous TM proteins detected***

Sequence and predicted topologies: (i: inside the membrane, o: outside of the membrane, M: membrane region, u: non-membrane region but location unkown)

 1                                           41         
Seq.   MSKIYKLKYI YPATEQVYGM CTVNTKTIVY DGLCGIELRN IDKIQWYETY
TOPCONS   
OCTOPUS   
PHILIUS   
PolyPhobius   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
SCAMPI   
SPOCTOPUS   
 
 51                                          91         
Seq.   IDSQNTNNQQ FKNALIGSFI AGSTGAIIAS AFKNNIQKPC QCMEVFYYDD
TOPCONS   
OCTOPUS   
PHILIUS   
PolyPhobius   iiiiiiiiii iiiMMMMMMM MMMMMMMMMM MMoooooooo oooooooooo
SCAMPI   
SPOCTOPUS   
 
 101                                         141        
Seq.   NQIKIIVLAD VFIKSQVSEC LYSLKDVLVQ YNINVNYKKI NFENSFMFRK
TOPCONS   
OCTOPUS   
PHILIUS   
PolyPhobius   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SCAMPI   
SPOCTOPUS   
 
 151                                         191        
Seq.   NNNNIINNSK QNNNSEQNDI PTQIKQLAEL KKQGILTDEE FTSKKQELLA
TOPCONS   
OCTOPUS   
PHILIUS   
PolyPhobius   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SCAMPI   
SPOCTOPUS   
 
 201        
Seq.   RL
TOPCONS   
OCTOPUS   
PHILIUS   
PolyPhobius   oo
SCAMPI   
SPOCTOPUS