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© Arne Elofsson

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Prediction in text file can be found in query.result.txt

The sequence file in FASTA format can be found in seq.fa


Predicted topologies and predicted ΔG values:

Topology
High-resolution image


Consensus prediction (TOPCONS):

Consensus
High-resolution image

Predicted signal peptide and TM-helix positions (position starting from 1):

TOPCONS  TM1: 13-33, TM2: 142-162, TM3: 164-184, TM4: 194-214, TM5: 252-272, TM6: 282-302, TM7: 333-353
OCTOPUS  TM1: 13-33, TM2: 154-168, TM3: 170-184, TM4: 194-214, TM5: 252-272, TM6: 283-303, TM7: 333-353
Philius  TM1: 13-33, TM2: 164-184, TM3: 194-216, TM4: 252-272, TM5: 282-302, TM6: 332-354
PolyPhobius  TM1: 12-33, TM2: 155-183, TM3: 195-217, TM4: 249-274, TM5: 282-302, TM6: 332-354
SCAMPI  TM1: 15-35, TM2: 164-184, TM3: 196-216, TM4: 257-277, TM5: 282-302, TM6: 332-352
SPOCTOPUS  TM1: 13-33, TM2: 154-168, TM3: 170-184, TM4: 194-214, TM5: 252-272, TM6: 283-303, TM7: 333-353
PDB-homology  ***No homologous TM proteins detected***

Sequence and predicted topologies: (i: inside the membrane, o: outside of the membrane, M: membrane region, u: non-membrane region but location unkown)

 1                                           41         
Seq.   MNHIVSRRNN TSTVYILFIS YFIFLLTTLL GITQHSVREN LNFLQDKYNE
TOPCONS   oooooooooo ooMMMMMMMM MMMMMMMMMM MMMiiiiiii iiiiiiiiii
OCTOPUS   oooooooooo ooMMMMMMMM MMMMMMMMMM MMMiiiiiii iiiiiiiiii
PHILIUS   iiiiiiiiii iiMMMMMMMM MMMMMMMMMM MMMooooooo oooooooooo
PolyPhobius   iiiiiiiiii iMMMMMMMMM MMMMMMMMMM MMMooooooo oooooooooo
SCAMPI   oooooooooo ooooMMMMMM MMMMMMMMMM MMMMMiiiii iiiiiiiiii
SPOCTOPUS   oooooooooo ooMMMMMMMM MMMMMMMMMM MMMiiiiiii iiiiiiiiii
 
 51                                          91         
Seq.   INDKYNYLIN NMSVGNIEEN NREVIYLDEM RNEILDSVGK EGEFWKAELK
TOPCONS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
OCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
PHILIUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PolyPhobius   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SCAMPI   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
SPOCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
 
 101                                         141        
Seq.   NIILQKEKLL SENFMNKKDE LHNKSYLHLK NEIDEYNLYY SLGKKPLDYL
TOPCONS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iMMMMMMMMM
OCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
PHILIUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PolyPhobius   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SCAMPI   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
SPOCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
 
 151                                         191        
Seq.   DGFFIRYFLF LFNSLGHQIF LTCIVLGVCY LYISDVKYIG FSKTMFVSCI
TOPCONS   MMMMMMMMMM MMoMMMMMMM MMMMMMMMMM MMMMiiiiii iiiMMMMMMM
OCTOPUS   iiiMMMMMMM MMMMMMMMoM MMMMMMMMMM MMMMiiiiii iiiMMMMMMM
PHILIUS   oooooooooo oooMMMMMMM MMMMMMMMMM MMMMiiiiii iiiMMMMMMM
PolyPhobius   ooooMMMMMM MMMMMMMMMM MMMMMMMMMM MMMiiiiiii iiiiMMMMMM
SCAMPI   iiiiiiiiii iiiMMMMMMM MMMMMMMMMM MMMMoooooo oooooMMMMM
SPOCTOPUS   iiiMMMMMMM MMMMMMMMoM MMMMMMMMMM MMMMiiiiii iiiMMMMMMM
 
 201                                         241        
Seq.   PILCIQIFSL ICCIALDDKT DIYYPVRIVQ DFNIYNFNNN VSAVNDIIPL
TOPCONS   MMMMMMMMMM MMMMoooooo oooooooooo oooooooooo oooooooooo
OCTOPUS   MMMMMMMMMM MMMMoooooo oooooooooo oooooooooo oooooooooo
PHILIUS   MMMMMMMMMM MMMMMMoooo oooooooooo oooooooooo oooooooooo
PolyPhobius   MMMMMMMMMM MMMMMMMooo oooooooooo oooooooooo ooooooooMM
SCAMPI   MMMMMMMMMM MMMMMMiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
SPOCTOPUS   MMMMMMMMMM MMMMoooooo oooooooooo oooooooooo oooooooooo
 
 251                                         291        
Seq.   HIAIFRVLLL EVLYIAFIVS FIKIIDLIFT KYYMKIIGAF IFLFSMFGML
TOPCONS   oMMMMMMMMM MMMMMMMMMM MMiiiiiiii iMMMMMMMMM MMMMMMMMMM
OCTOPUS   oMMMMMMMMM MMMMMMMMMM MMiiiiiiii iiMMMMMMMM MMMMMMMMMM
PHILIUS   oMMMMMMMMM MMMMMMMMMM MMiiiiiiii iMMMMMMMMM MMMMMMMMMM
PolyPhobius   MMMMMMMMMM MMMMMMMMMM MMMMiiiiii iMMMMMMMMM MMMMMMMMMM
SCAMPI   iiiiiiMMMM MMMMMMMMMM MMMMMMMooo oMMMMMMMMM MMMMMMMMMM
SPOCTOPUS   oMMMMMMMMM MMMMMMMMMM MMiiiiiiii iiMMMMMMMM MMMMMMMMMM
 
 301                                         341        
Seq.   YTRYSSISFL SYGKFLNIVR GYEAIYNENM YLSINFLFIF VFFILIVLSF
TOPCONS   MMoooooooo oooooooooo oooooooooo ooMMMMMMMM MMMMMMMMMM
OCTOPUS   MMMooooooo oooooooooo oooooooooo ooMMMMMMMM MMMMMMMMMM
PHILIUS   MMoooooooo oooooooooo oooooooooo oMMMMMMMMM MMMMMMMMMM
PolyPhobius   MMoooooooo oooooooooo oooooooooo oMMMMMMMMM MMMMMMMMMM
SCAMPI   MMiiiiiiii iiiiiiiiii iiiiiiiiii iMMMMMMMMM MMMMMMMMMM
SPOCTOPUS   MMMooooooo oooooooooo oooooooooo ooMMMMMMMM MMMMMMMMMM
 
 351        361        
Seq.   IYFLKKYFLN DEYIV
TOPCONS   MMMiiiiiii iiiii
OCTOPUS   MMMiiiiiii iiiii
PHILIUS   MMMMiiiiii iiiii
PolyPhobius   MMMMiiiiii iiiii
SCAMPI   MMoooooooo ooooo
SPOCTOPUS   MMMiiiiiii iiiii