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© Arne Elofsson

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Prediction in text file can be found in query.result.txt

The sequence file in FASTA format can be found in seq.fa


Predicted topologies and predicted ΔG values:

Topology
High-resolution image


Consensus prediction (TOPCONS):

Consensus
High-resolution image

Predicted signal peptide and TM-helix positions (position starting from 1):

TOPCONS  TM1: 50-70
OCTOPUS  TM1: 50-70
Philius  TM1: 51-74
PolyPhobius  TM1: 51-75
SCAMPI  TM1: 49-69
SPOCTOPUS  TM1: 50-70
PDB-homology  ***No homologous TM proteins detected***

Sequence and predicted topologies: (i: inside the membrane, o: outside of the membrane, M: membrane region, u: non-membrane region but location unkown)

 1                                           41         
Seq.   MKPRVFEPDA IEGETGSRGG QNGAAALARS EKRQQARVLS REKRRKKQYR
TOPCONS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiiM
OCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiiM
PHILIUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
PolyPhobius   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
SCAMPI   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiMM
SPOCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiiM
 
 51                                          91         
Seq.   LIGWLLVAIV VLWGASTLLW SGYGALKTAA SREMAIMRLK DAIEDRDVAA
TOPCONS   MMMMMMMMMM MMMMMMMMMM oooooooooo oooooooooo oooooooooo
OCTOPUS   MMMMMMMMMM MMMMMMMMMM oooooooooo oooooooooo oooooooooo
PHILIUS   MMMMMMMMMM MMMMMMMMMM MMMMoooooo oooooooooo oooooooooo
PolyPhobius   MMMMMMMMMM MMMMMMMMMM MMMMMooooo oooooooooo oooooooooo
SCAMPI   MMMMMMMMMM MMMMMMMMMo oooooooooo oooooooooo oooooooooo
SPOCTOPUS   MMMMMMMMMM MMMMMMMMMM oooooooooo oooooooooo oooooooooo
 
 101                                         141        
Seq.   LQAMLRVTEE SVPINEKTLA PLFAYVERHP EAYEQLDREF ARQRKSGHVY
TOPCONS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
OCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PHILIUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PolyPhobius   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SCAMPI   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SPOCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
 
 151                                         191        
Seq.   IKGLTSHPPV FTIHVFEDRY VFEPALYFLH VRVDDPEALL VVNGVKTEEE
TOPCONS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
OCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PHILIUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PolyPhobius   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SCAMPI   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SPOCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
 
 201                                         241        
Seq.   ATKDPFVKKI GPYLPGAYAV TVVHSNGKKK TVRVELFGGA RVHEVDITK
TOPCONS   oooooooooo oooooooooo oooooooooo oooooooooo ooooooooo
OCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo ooooooooo
PHILIUS   oooooooooo oooooooooo oooooooooo oooooooooo ooooooooo
PolyPhobius   oooooooooo oooooooooo oooooooooo oooooooooo ooooooooo
SCAMPI   oooooooooo oooooooooo oooooooooo oooooooooo ooooooooo
SPOCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo ooooooooo