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© Arne Elofsson

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Prediction in text file can be found in query.result.txt

The sequence file in FASTA format can be found in seq.fa


Predicted topologies and predicted ΔG values:

Topology
High-resolution image


Consensus prediction (TOPCONS):

Consensus
High-resolution image

Predicted signal peptide and TM-helix positions (position starting from 1):

TOPCONS  TM1: 181-201, TM2: 232-252, TM3: 263-283, TM4: 290-310, TM5: 318-338, TM6: 345-365
OCTOPUS  TM1: 181-201, TM2: 224-254, TM3: 261-281, TM4: 290-310, TM5: 318-338, TM6: 345-365
Philius  TM1: 176-198, TM2: 233-255, TM3: 264-285, TM4: 292-312, TM5: 320-338, TM6: 345-362
PolyPhobius  TM1: 177-202, TM2: 226-252, TM3: 264-283, TM4: 289-311, TM5: 320-339, TM6: 345-363
SCAMPI  TM1: 181-201, TM2: 225-245, TM3: 264-284, TM4: 291-311, TM5: 320-340, TM6: 344-364
SPOCTOPUS  TM1: 181-201, TM2: 225-255, TM3: 261-281, TM4: 290-310, TM5: 318-338, TM6: 345-365
PDB-homology  ***No homologous TM proteins detected***

Sequence and predicted topologies: (i: inside the membrane, o: outside of the membrane, M: membrane region, u: non-membrane region but location unkown)

 1                                           41         
Seq.   GMDVFYQTNL EQCTVYWLIE IYNGTEILND QYQNIKRQIE TAFFSKGYQK
TOPCONS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
OCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
PHILIUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
PolyPhobius   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
SCAMPI   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
SPOCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
 
 51                                          91         
Seq.   VLVYAILCTK NTEEALKICR MSESACIVDM LQYRLMLFEG QARDENGVFR
TOPCONS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
OCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
PHILIUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
PolyPhobius   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
SCAMPI   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
SPOCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
 
 101                                         141        
Seq.   GLEQLISEYG RLYFATHGGQ DYSSQNTDSQ GNNENSWGGY GSDYENQRSQ
TOPCONS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
OCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
PHILIUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
PolyPhobius   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
SCAMPI   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
SPOCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii iiiiiiiiii
 
 151                                         191        
Seq.   GTHQQGSYQQ GYGDYQSGKA YQRKNGFFSG VGIVTLVLIA LNAVVFFYTD
TOPCONS   iiiiiiiiii iiiiiiiiii iiiiiiiiii MMMMMMMMMM MMMMMMMMMM
OCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii MMMMMMMMMM MMMMMMMMMM
PHILIUS   iiiiiiiiii iiiiiiiiii iiiiiMMMMM MMMMMMMMMM MMMMMMMMoo
PolyPhobius   iiiiiiiiii iiiiiiiiii iiiiiiMMMM MMMMMMMMMM MMMMMMMMMM
SCAMPI   iiiiiiiiii iiiiiiiiii iiiiiiiiii MMMMMMMMMM MMMMMMMMMM
SPOCTOPUS   iiiiiiiiii iiiiiiiiii iiiiiiiiii MMMMMMMMMM MMMMMMMMMM
 
 201                                         241        
Seq.   LSGNYNKIIS EGCIFWPLIK FNNEYYRLLT YQFLHANISH LVNNMLILAI
TOPCONS   Mooooooooo oooooooooo oooooooooo oMMMMMMMMM MMMMMMMMMM
OCTOPUS   Mooooooooo oooooooooo oooMMMMMMM MMMMMMMMMM MMMMMMMMMM
PHILIUS   oooooooooo oooooooooo oooooooooo ooMMMMMMMM MMMMMMMMMM
PolyPhobius   MMoooooooo oooooooooo oooooMMMMM MMMMMMMMMM MMMMMMMMMM
SCAMPI   Mooooooooo oooooooooo ooooMMMMMM MMMMMMMMMM MMMMMiiiii
SPOCTOPUS   Mooooooooo oooooooooo ooooMMMMMM MMMMMMMMMM MMMMMMMMMM
 
 251                                         291        
Seq.   MGSTLERHVG KFKYLLIYFL SGIVAGIASM SYNMWKGLFS NSIGASGAVF
TOPCONS   MMiiiiiiii iiMMMMMMMM MMMMMMMMMM MMMooooooM MMMMMMMMMM
OCTOPUS   MMMMiiiiii MMMMMMMMMM MMMMMMMMMM MooooooooM MMMMMMMMMM
PHILIUS   MMMMMiiiii iiiMMMMMMM MMMMMMMMMM MMMMMooooo oMMMMMMMMM
PolyPhobius   MMiiiiiiii iiiMMMMMMM MMMMMMMMMM MMMoooooMM MMMMMMMMMM
SCAMPI   iiiiiiiiii iiiMMMMMMM MMMMMMMMMM MMMMoooooo MMMMMMMMMM
SPOCTOPUS   MMMMMiiiii MMMMMMMMMM MMMMMMMMMM MooooooooM MMMMMMMMMM
 
 301                                         341        
Seq.   GVIGAIALIV VVNKGRLETI GTRQIIIFIA LSLYGGFTSQ GVDNAAHVGG
TOPCONS   MMMMMMMMMM iiiiiiiMMM MMMMMMMMMM MMMMMMMMoo ooooMMMMMM
OCTOPUS   MMMMMMMMMM iiiiiiiMMM MMMMMMMMMM MMMMMMMMoo ooooMMMMMM
PHILIUS   MMMMMMMMMM MMiiiiiiiM MMMMMMMMMM MMMMMMMMoo ooooMMMMMM
PolyPhobius   MMMMMMMMMM MiiiiiiiiM MMMMMMMMMM MMMMMMMMMo ooooMMMMMM
SCAMPI   MMMMMMMMMM MiiiiiiiiM MMMMMMMMMM MMMMMMMMMM oooMMMMMMM
SPOCTOPUS   MMMMMMMMMM iiiiiiiMMM MMMMMMMMMM MMMMMMMMoo ooooMMMMMM
 
 351                   371        
Seq.   LLAGFFIAML VYRKKRGRIR ED
TOPCONS   MMMMMMMMMM MMMMMiiiii ii
OCTOPUS   MMMMMMMMMM MMMMMiiiii ii
PHILIUS   MMMMMMMMMM MMiiiiiiii ii
PolyPhobius   MMMMMMMMMM MMMiiiiiii ii
SCAMPI   MMMMMMMMMM MMMMiiiiii ii
SPOCTOPUS   MMMMMMMMMM MMMMMiiiii ii