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© Arne Elofsson

SciLifeLab Logotype nbis Logotype
SeRC Logotype Stockholm University logotype EGI logotype

Prediction in text file can be found in query.result.txt

The sequence file in FASTA format can be found in seq.fa


Predicted topologies and predicted ΔG values:

Topology
High-resolution image


Consensus prediction (TOPCONS):

Consensus
High-resolution image

Predicted signal peptide and TM-helix positions (position starting from 1):

TOPCONS  TM1: 22-42
OCTOPUS  TM1: 22-42
Philius  TM1: 21-44
PolyPhobius  TM1: 21-44
SCAMPI  TM1: 20-40
SPOCTOPUS  TM1: 22-42
PDB-homology  ***No homologous TM proteins detected***

Sequence and predicted topologies: (i: inside the membrane, o: outside of the membrane, M: membrane region, u: non-membrane region but location unkown)

 1                                           41         
Seq.   RYEKRQQARV LSREKRKKQY RFIGWLLFAF AVLWGMGALI WSGYGALKTT
TOPCONS   iiiiiiiiii iiiiiiiiii iMMMMMMMMM MMMMMMMMMM MMoooooooo
OCTOPUS   iiiiiiiiii iiiiiiiiii iMMMMMMMMM MMMMMMMMMM MMoooooooo
PHILIUS   iiiiiiiiii iiiiiiiiii MMMMMMMMMM MMMMMMMMMM MMMMoooooo
PolyPhobius   iiiiiiiiii iiiiiiiiii MMMMMMMMMM MMMMMMMMMM MMMMoooooo
SCAMPI   iiiiiiiiii iiiiiiiiiM MMMMMMMMMM MMMMMMMMMM oooooooooo
SPOCTOPUS   iiiiiiiiii iiiiiiiiii iMMMMMMMMM MMMMMMMMMM MMoooooooo
 
 51                                          91         
Seq.   AGREIAIMRL KGAIEDRNAA ALQVMLRVTD ETVPLNDQTL TPLFAYFDQH
TOPCONS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
OCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PHILIUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PolyPhobius   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SCAMPI   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SPOCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
 
 101                                         141        
Seq.   PEAYKMLDEE FARQSEGKQV YIKGLTSHPP VFTIHVFENR YVFEPALYFI
TOPCONS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
OCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PHILIUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PolyPhobius   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SCAMPI   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SPOCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
 
 151                                         191        
Seq.   HARVADSEAT LVVNGVKVKE EETKDPFVKK IGPYLPGAYT VTAVHPDGKK
TOPCONS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
OCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PHILIUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
PolyPhobius   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SCAMPI   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
SPOCTOPUS   oooooooooo oooooooooo oooooooooo oooooooooo oooooooooo
 
 201        211        
Seq.   KTARVELFGG ARVREVDITK
TOPCONS   oooooooooo oooooooooo
OCTOPUS   oooooooooo oooooooooo
PHILIUS   oooooooooo oooooooooo
PolyPhobius   oooooooooo oooooooooo
SCAMPI   oooooooooo oooooooooo
SPOCTOPUS   oooooooooo oooooooooo