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© Arne Elofsson

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Results

  • Submitted: 2015-02-09 13:53:19
  • Status: Finished
  • Waiting time: 0 sec
  • Running Time: 3 secs
Results of your prediction with jobid: example_1seq

Zipped folder of your result can be found in example_1seq.zip

Dumped prediction in one text file can be found in query.result.txt

The sequence(s) you submitted can be found in query.raw.fa



Predicted topologies and predicted ΔG values:

Topology
High-resolution image


Consensus prediction (TOPCONS):

Consensus
High-resolution image

Predicted signal peptide and TM-helix positions (position starting from 1):

TOPCONS  TM1: 18-38, TM2: 50-70, TM3: 90-110, TM4: 116-136, TM5: 143-163, TM6: 180-200, TM7: 213-233
OCTOPUS  TM1: 18-38, TM2: 50-70, TM3: 90-110, TM4: 116-136, TM5: 143-163, TM6: 180-200, TM7: 211-231
Philius  TM1: 18-37, TM2: 50-72, TM3: 90-108, TM4: 116-136, TM5: 143-164, TM6: 182-201, TM7: 214-233
PolyPhobius  TM1: 19-38, TM2: 50-72, TM3: 91-109, TM4: 116-137, TM5: 143-162, TM6: 182-200, TM7: 214-233
SCAMPI  TM1: 17-37, TM2: 50-70, TM3: 89-109, TM4: 116-136, TM5: 141-161, TM6: 179-199, TM7: 214-234
SPOCTOPUS  TM1: 18-38, TM2: 50-70, TM3: 90-110, TM4: 116-136, TM5: 143-163, TM6: 180-200, TM7: 211-231
PDB-homology  ***No homologous TM proteins detected***

Sequence and predicted topologies: (i: inside the membrane, o: outside of the membrane, M: membrane region, u: non-membrane region but location unkown)

 1                                           41         
Seq.   MCCAALAPPM AATVGPESIW LWIGTIGMTL GTLYFVGRGR GVRDRKMQEF
TOPCONS   oooooooooo oooooooMMM MMMMMMMMMM MMMMMMMMii iiiiiiiiiM
OCTOPUS   oooooooooo oooooooMMM MMMMMMMMMM MMMMMMMMii iiiiiiiiiM
PHILIUS   oooooooooo oooooooMMM MMMMMMMMMM MMMMMMMiii iiiiiiiiiM
PolyPhobius   oooooooooo ooooooooMM MMMMMMMMMM MMMMMMMMii iiiiiiiiiM
SCAMPI   oooooooooo ooooooMMMM MMMMMMMMMM MMMMMMMiii iiiiiiiiiM
SPOCTOPUS   oooooooooo oooooooMMM MMMMMMMMMM MMMMMMMMii iiiiiiiiiM
 
 51                                          91         
Seq.   YIITIFITTI AAAMYFAMAT GFGVTEVMVG DEALTIYWAR YADWLFTTPL
TOPCONS   MMMMMMMMMM MMMMMMMMMM oooooooooo oooooooooM MMMMMMMMMM
OCTOPUS   MMMMMMMMMM MMMMMMMMMM oooooooooo oooooooooM MMMMMMMMMM
PHILIUS   MMMMMMMMMM MMMMMMMMMM MMoooooooo oooooooooM MMMMMMMMMM
PolyPhobius   MMMMMMMMMM MMMMMMMMMM MMoooooooo oooooooooo MMMMMMMMMM
SCAMPI   MMMMMMMMMM MMMMMMMMMM oooooooooo ooooooooMM MMMMMMMMMM
SPOCTOPUS   MMMMMMMMMM MMMMMMMMMM oooooooooo oooooooooM MMMMMMMMMM
 
 101                                         141        
Seq.   LLLDLSLLAG ANRNTIATLI GLDVFMIGTG AIAALSSTPG TRIAWWAIST
TOPCONS   MMMMMMMMMM iiiiiMMMMM MMMMMMMMMM MMMMMMoooo ooMMMMMMMM
OCTOPUS   MMMMMMMMMM iiiiiMMMMM MMMMMMMMMM MMMMMMoooo ooMMMMMMMM
PHILIUS   MMMMMMMMii iiiiiMMMMM MMMMMMMMMM MMMMMMoooo ooMMMMMMMM
PolyPhobius   MMMMMMMMMi iiiiiMMMMM MMMMMMMMMM MMMMMMMooo ooMMMMMMMM
SCAMPI   MMMMMMMMMi iiiiiMMMMM MMMMMMMMMM MMMMMMoooo MMMMMMMMMM
SPOCTOPUS   MMMMMMMMMM iiiiiMMMMM MMMMMMMMMM MMMMMMoooo ooMMMMMMMM
 
 151                                         191        
Seq.   GALLALLYVL VGTLSENARN RAPEVASLFG RLRNLVIALW FLYPVVWILG
TOPCONS   MMMMMMMMMM MMMiiiiiii iiiiiiiiiM MMMMMMMMMM MMMMMMMMMM
OCTOPUS   MMMMMMMMMM MMMiiiiiii iiiiiiiiiM MMMMMMMMMM MMMMMMMMMM
PHILIUS   MMMMMMMMMM MMMMiiiiii iiiiiiiiii iMMMMMMMMM MMMMMMMMMM
PolyPhobius   MMMMMMMMMM MMiiiiiiii iiiiiiiiii iMMMMMMMMM MMMMMMMMMM
SCAMPI   MMMMMMMMMM Miiiiiiiii iiiiiiiiMM MMMMMMMMMM MMMMMMMMMo
SPOCTOPUS   MMMMMMMMMM MMMiiiiiii iiiiiiiiiM MMMMMMMMMM MMMMMMMMMM
 
 201                                         241        
Seq.   TEGTFGILPL YWETAAFMVL DLSAKVGFGV ILLQSRSVLE RVATPTAAPT
TOPCONS   oooooooooo ooMMMMMMMM MMMMMMMMMM MMMiiiiiii iiiiiiiiii
OCTOPUS   oooooooooo MMMMMMMMMM MMMMMMMMMM Miiiiiiiii iiiiiiiiii
PHILIUS   Mooooooooo oooMMMMMMM MMMMMMMMMM MMMiiiiiii iiiiiiiiii
PolyPhobius   oooooooooo oooMMMMMMM MMMMMMMMMM MMMiiiiiii iiiiiiiiii
SCAMPI   oooooooooo oooMMMMMMM MMMMMMMMMM MMMMiiiiii iiiiiiiiii
SPOCTOPUS   oooooooooo MMMMMMMMMM MMMMMMMMMM Miiiiiiiii iiiiiiiiii