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© Arne Elofsson

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References

TOPCONS: [Please cite this paper if you find TOPCONS useful in your research]
The TOPCONS web server for combined membrane protein topology and signal peptide prediction.
Tsirigos KD*, Peters C*, Shu N*, Käll L and Elofsson A (2015) Nucleic Acids Research 43 (Webserver issue), W401-W407. [PubMed]
Old TOPCONS:
TOPCONS: consensus prediction of membrane protein topology.
Bernsel A*, Viklund H*, Hennerdal A and Elofsson A (2009) Nucleic Acids Research 37 (Webserver issue), W465-8. [PubMed]
OCTOPUS: A method that improves topology prediction for transmembrane proteins by using two-track ANN-based preference scores and an improved topological grammar.
Viklund H and Elofsson A (2008) Bioinformatics. 24, 1662-1668. [Pubmed]
PHILIUS: Transmembrane topology and signal peptide prediction using dynamic bayesian networks.
Reynolds SM, Käll L, Riffle ME, Bilmes JA and Noble WS (2008) PLoS Comput Biol. 11. [Pubmed]
POLYPHOBIUS An HMM posterior decoder for sequence feature prediction that includes homology information.
Käll L, Krogh A and Sonnhammer EL (2005) Bioinformatics. 21, i251-i257. [Pubmed]
SCAMPI: Prediction of membrane-protein topology from first principles.
Bernsel A, Viklund H, Falk J, Lindahl E, von Heijne G and Elofsson A (2008) Proc. Natl. Acad. Sci. USA. 105, 7177-7181. [Pubmed]
SPOCTOPUS: SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology.
Viklund H, Bernsel A, Skwark M and Elofsson A. (2008) Bioinformatics. 24, 2928-2929. [Pubmed]
ΔG-scale: Molecular code for transmembrane-helix recognition by the Sec61 translocon.
Hessa T, Meindl-Beinker NM, Bernsel A, Kim H, Sato Y, Lerch-Bader M, Nilsson I, White SH and von Heijne G. (2007) Nature 450, 1026-1030. [PubMed]